Assignment: Atlantis

Assignment: Atlantis is the 29th episode of Star Trek: Intrepid in season 11.

Plot
Typhuss takes the assignment he was offered ten years earlier by Doctor Elizabeth Weir, take command of the Atlantis Expedition, Starbase Atlantis and Starbase 290. John Sheppard is offered to become his first officer, as John and Typhuss make decisions about their new positions and assignments as Typhuss informs Sam about his new assignment, will this effect their friendship?. As Sam comes to gradually accept that she is no longer in command of the expedition.

Main Cast

 * Daniel Craig as Vice Admiral Typhuss James Kira
 * Roxann Dawson as Lieutenant Commander B'Elanna Torres
 * Steven Culp as Commander Martin Madden

Guest Stars

 * Joe Flanigan as Colonel John Sheppard
 * Rachel Luttrell as Teyla Emmagan
 * Jason Momoa as Ronon Dex
 * David Hewlett as Doctor Rodney McKay
 * Torri Higginson as Doctor Elizabeth Weir
 * Amanda Tapping as Lieutenant General Samantha Carter
 * Nana Visitor as Vedek Kira Nerys
 * Jewel Staite as Doctor Jennifer Keller
 * David Nykl as Doctor Radek Zelenka
 * Bruce Boxleitner as Admiral John Martin

​Memorable quotes
"I want to take the assignment I was offered ten years ago.'"
 * —Typhuss to Doctor Weir

"I had a feeling that this was coming.'"
 * —Doctor Weir to Typhuss

"You are the new commanding officer of the Atlantis Expedition, this is some kind of joke right, Rodney put you up to this."
 * —Sheppard to Typhuss

"Its not a joke, John, I want you to be my first officer if you want the job."
 * —Typhuss to Colonel Sheppard

"I would be honored, Admiral, how did Sam take the news."
 * —Sheppard to Typhuss

"Not well, Sam is mad at me for wanting the command."
 * —Typhuss to Colonel Sheppard